#Historical and #genomic data reveal the influencing factors on global #transmission #velocity of #plague during the Third #Pandemic (Proc Natl Acad Sci USA, abstract)

[Source: Proceedings of the National Academy of Sciences of the United States of America, full page: (LINK). Abstract, edited.]

Historical and genomic data reveal the influencing factors on global transmission velocity of plague during the Third Pandemic

Lei Xu, Leif C. Stige, Herwig Leirs, Simon Neerinckx, Kenneth L. Gage, Ruifu Yang, Qiyong Liu, Barbara Bramanti, Katharine R. Dean, Hui Tang, Zhe Sun, Nils Chr. Stenseth, and Zhibin Zhang

PNAS first published May 28, 2019 / DOI: https://doi.org/10.1073/pnas.1901366116

Contributed by Nils Chr. Stenseth, April 9, 2019 (sent for review January 28, 2019; reviewed by Javier Pizarro-Cerda and Qiwei Yao)



Plague is a devastating infectious disease that has caused three pandemics during the last millennia. Today, plague still causes sporadic cases every year and even some outbreaks. In this paper, we analyze how factors associated with climate change and globalization affect the spread of plague worldwide. Such information is important with respect to global disease prevention and control. For this purpose, we first constructed a global plague database of the Third Pandemic, and then analyzed the association of spatiotemporal environmental factors with spreading velocity. Our results provide insight into the global transmission and suggest strategies for preventing plague transmission under accelerated global change.



Quantitative knowledge about which natural and anthropogenic factors influence the global spread of plague remains sparse. We estimated the worldwide spreading velocity of plague during the Third Pandemic, using more than 200 years of extensive human plague case records and genomic data, and analyzed the association of spatiotemporal environmental factors with spreading velocity. Here, we show that two lineages, 2.MED and 1.ORI3, spread significantly faster than others, possibly reflecting differences among strains in transmission mechanisms and virulence. Plague spread fastest in regions with low population density and high proportion of pasture- or forestland, findings that should be taken into account for effective plague monitoring and control. Temperature exhibited a nonlinear, U-shaped association with spread speed, with a minimum around 20 °C, while precipitation showed a positive association. Our results suggest that global warming may accelerate plague spread in warm, tropical regions and that the projected increased precipitation in the Northern Hemisphere may increase plague spread in relevant regions.

Yersinia pestis – Third Pandemic – climate change – global transmission velocity – historical and genomic data

Keywords: Yersinia pestis; Plague.


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Giuseppe Michieli

I am an Italian blogger, active since 2005 with main focus on emerging infectious diseases such as avian influenza, SARS, antibiotics resistance, and many other global Health issues. Other fields of interest are: climate change, global warming, geological and biological sciences. My activity consists mainly in collection and analysis of news, public services updates, confronting sources and making decision about what are the 'signals' of an impending crisis (an outbreak, for example). When a signal is detected, I follow traces during the entire course of an event. I started in 2005 my blog ''A TIME'S MEMORY'', now with more than 40,000 posts and 3 millions of web interactions. Subsequently I added an Italian Language blog, then discontinued because of very low traffic and interest. I contributed for seven years to a public forum (FluTrackers.com) in the midst of the Ebola epidemic in West Africa in 2014, I left the site to continue alone my data tracking job.